2023
Kim, Y.-H., Park, C.-W., Hong, W.-J., Jo, I.H., Kim, K.K., Kim, Y.-J., 2023. Protocol for efficient ginseng transformation. Plant Cell Tiss. Organ Cult. 153, 429–437. https://doi.org/10.1007/s11240-023-02465-y
Lee, C., Lee, Y.-S., Hong, H.-C., Hong, W.-J., Koh, H.-J., Jung, K.-H., 2023. Reinterpretation of anthocyanins biosynthesis in developing black rice seeds through gene expression analysis. PLoS One 18, e0286539. https://doi.org/10.1371/journal.pone.0286539
Jang, M.-J.† , Hong, W.-J.† , Park, Y.-S., Jung, K.-H., Kim, S., 2023. Genomic basis of multiphase evolution driving divergent selection of zinc-finger homeodomain genes. Nucleic Acids Res. gkad489. https://doi.org/10.1093/nar/gkad489 (Co-first)
Lee, S.K., Hong, W.-J., Kim, E.-J., Moon, S., Kim, Y.-J., Park, S.-K., Jung, K.-H., 2023. Functional Characterization of OsRac6 Involved in Pollen Germination in Rice. J. Plant Biol. https://doi.org/10.1007/s12374-023-09403-7
Jiang, X., Hong, W.-J., Lee, S.-K., Jung, K.-H., 2023. Genome-Wide Identification and Analysis of Collar Region-Preferential Genes in Rice. Plants 12, 2959. https://doi.org/10.3390/plants12162959
Kim, E.-J., Kim, J.-H., Hong, W.-J., Kim, E.Y., Kim, M.-H., Lee, S.K., Min, C.W., Kim, S.T., Park, S.K., Jung, K.-H., Kim, Y.-J., 2023. Rice pollen-specific OsRALF17 and OsRALF19 are essential for pollen tube growth. J. Integr. Plant Biol. https://doi.org/10.1111/jipb.13508
2017~2022 (Before CBI)
Noh, G., Kim, J.-H., Cho, S.W., Kim, Y.-H., Jung, J.-Y., Hong, W.-J., Jung, K.-H., Park, G., Son, H.-J., Jo, I.H., Song, Y.H., Kim, S.T., Kim, Y.-J., 2022. Overexpression of the ginseng GH18 gene confers salinity tolerance in Arabidopsis. Plant Biotechnol. Rep. 16, 683–696. https://doi.org/10.1007/s11816-022-00807-4
Moon, S., Kim, Y.-J., Park, H.E., Kim, J., Gho, Y.S., Hong, W.-J., Kim, E.-J., Lee, S.K., Suh, B.-C., An, G., Jung, K.-H., 2022. OsSNDP3 Functions for the Polar Tip Growth in Rice Pollen Together with OsSNDP2, a Paralog of OsSNDP3. Rice 15, 39. https://doi.org/10.1186/s12284-022-00586-0
Hong, W.-J., Kim, E.-J., Yoon, J., Silva, J., Moon, S., Min, C.W., Cho, L.-H., Kim, S.T., Park, S.K., Kim, Y.-J., Jung, K.-H., 2022. A myosin XI adaptor, TAPE, is essential for pollen tube elongation in rice. Plant Physiol. kiac299. https://doi.org/10.1093/plphys/kiac299
Hong, W.-J.† , Lee, S.K.† , Kim, S.-H.† , Kim, Y.-J., Moon, S., Kim, E.-J., Silva, J., Jung, K.-H., 2022. Comparative transcriptome analysis of pollen and anther wall reveals novel insights into the regulatory mechanisms underlying anther wall development and its dehiscence in rice. Plant Cell Rep. 41, 1229–1242. https://doi.org/10.1007/s00299-022-02852-3 (Co-first)
Kim, E.-J., Hong, W.-J., Kim, Y.-J., Jung, K.-H., 2022. Transcriptome Analysis of Triple Mutant for OsMADS62, OsMADS63, and OsMADS68 Reveals the Downstream Regulatory Mechanism for Pollen Germination in Rice (Oryza sativa). Int. J. Mol. Sci. 23, 239. https://doi.org/10.3390/ijms23010239
Cho, L.-H., Yoon, J., Tun, W., Baek, G., Peng, X., Hong, W.-J., Mori, I.C., Hojo, Y., Matsuura, T., Kim, S.-R., Kim, S.-T., Kwon, S.-W., Jung, K.-H., Jeon, J.-S., An, G., 2022. Cytokinin increases vegetative growth period by suppressing florigen expression in rice and maize. Plant J. 110, 1619–1635. https://doi.org/10.1111/tpj.15760
Young Chae, G.†, Hong, W.-J.†, Jeong Jang, M., Jung, K.-H., Kim, S., 2021. Recurrent mutations promote widespread structural and functional divergence of MULE-derived genes in plants. Nucleic Acids Res. 49, 11765–11777. https://doi.org/10.1093/nar/gkab932
(Co-first)Hong, W.-J.†, Jiang, X.†, Choi, S.-H., Kim, Y.-J., Kim, S.-T., Jeon, J.-S., Jung, K.-H., 2021. A Systemic View of Carbohydrate Metabolism in Rice to Facilitate Productivity. Plants 10, 1690. https://doi.org/10.3390/plants10081690 (Co-first)
Van Nguyen, T., Kim, S.-W., Min, C.-W., Gupta, R., Lee, G.-H., Jang, J.-W., Rathi, D., Shin, H.-W., Jung, J.-Y., Jo, I.-H., Hong, W.-J., Jung, K.-H., Kim, S., Kim, Y.-J., Kim, S.-T., 2021. Optimization of Protein Isolation and Label-Free Quantitative Proteomic Analysis in Four Different Tissues of Korean Ginseng. Plants 10, 1409. https://doi.org/10.3390/plants10071409
Min, M.K., Kim, R., Hong, W.-J., Jung, K.-H., Lee, J.-Y., Kim, B.-G., 2021. OsPP2C09 Is a Bifunctional Regulator in Both ABA-Dependent and Independent Abiotic Stress Signaling Pathways. Int. J. Mol. Sci. 22, 393. https://doi.org/10.3390/ijms22010393
Lee, C., Hong, W.-J., Jung, K.-H., Hong, H.-C., Kim, D.-Y., Ok, H.-C., Choi, M.-S., Park, S.-K., Kim, J., Koh, H.-J., 2021b. Arachis hypogaea resveratrol synthase 3 alters the expression pattern of UDP-glycosyltransferase genes in developing rice seeds. PLoS One 16, e0245446. https://doi.org/10.1371/journal.pone.0245446
Yoon, J., Cho, L.-H., Kim, S.-R., Tun, W., Peng, X., Pasriga, R., Moon, S., Hong, W.-J., Ji, H., Jung, K.-H., Jeon, J.-S., An, G., 2021. CTP synthase is essential for early endosperm development by regulating nuclei spacing. Plant Biotechnol. J. 19, 2177–2191. https://doi.org/10.1111/pbi.13644
Lee, S.K., Hong, W.-J., Silva, J., Kim, E.-J., Park, S.K., Jung, K.-H., Kim, Y.-J., 2021. Global Identification of ANTH Genes Involved in Rice Pollen Germination and Functional Characterization of a Key Member, OsANTH3. Front. Plant Sci. 12.
Lee, C., Chung, C.-T., Hong, W.-J., Lee, Y.-S., Lee, J.-H., Koh, H.-J., Jung, K.-H., 2021. Transcriptional Changes in the Developing Rice Seeds Under Salt Stress Suggest Targets for Manipulating Seed Quality. Front. Plant Sci. 12.
Kim, Y.-J.†, Kim, M.-H.†, Hong, W.-J.†, Moon, S., Kim, S.T., Park, S.K., Jung, K.-H., 2021. OsMTD2-mediated reactive oxygen species (ROS) balance is essential for intact pollen-tube elongation in rice. Plant J. 107, 1131–1147. https://doi.org/10.1111/tpj.15373 (Co-first)
Kim, Y.-J., Kim, M.-H., Hong, W.-J., Moon, S., Kim, E.-J., Silva, J., Lee, J., Lee, S., Kim, S.T., Park, S.K., Jung, K.-H., 2021. GORI, encoding the WD40 domain protein, is required for pollen tube germination and elongation in rice. Plant J. 105, 1645–1664. https://doi.org/10.1111/tpj.15139
Kim, E.-J., Hong, W.-J., Tun, W., An, G., Kim, S.-T., Kim, Y.-J., Jung, K.-H., 2021. Interaction of OsRopGEF3 Protein With OsRac3 to Regulate Root Hair Elongation and Reactive Oxygen Species Formation in Rice (Oryza sativa). Front. Plant Sci. 12.
Chandran, A.K.N.†, Hong, W.-J.†, Abhijith, B.†, Lee, J., Kim, Y.-J., Park, S.K., Jung, K.-H., 2020. Rice Male Gamete Expression Database (RMEDB): A Web Resource for Functional Genomic Studies of Rice Male Organ Development. J. Plant Biol. 63, 421–430. https://doi.org/10.1007/s12374-020-09267-1 (Co-first)
Peng Yuan, D.†, Xu, X.F.†, Hong, W.-J.†, Wang, S.T., Jia, X.T., Liu, Y., Li, Shuang, Li, Z.M., Sun, Q., Mei, Q., Li, Shuai, Jung, K.-H., Wei, S.H., Xuan, Y.H., 2020. Transcriptome analysis of rice leaves in response to Rhizoctonia solani infection and reveals a novel regulatory mechanism. Plant Biotechnol. Rep. 14, 559–573. https://doi.org/10.1007/s11816-020-00630-9 (Co-first)
Yoon, J., Cho, L.-H., Yang, W., Pasriga, R., Wu, Y., Hong, W.-J., Bureau, C., Wi, S.J., Zhang, T., Wang, R., Zhang, D., Jung, K.-H., Park, K.Y., Périn, C., Zhao, Y., An, G., 2020. Homeobox transcription factor OsZHD2 promotes root meristem activity in rice by inducing ethylene biosynthesis. J. Exp. Bot. 71, 5348–5364. https://doi.org/10.1093/jxb/eraa209
Moon, S.†, Hong, W.-J.†, Kim, Y.-J.†, Chandran, A.K.N., Gho, Y.-S., Yoo, Y.-H., Nguyen, V.N.T., An, G., Park, S.K., Jung, K.-H., 2020. Comparative Transcriptome Analysis Reveals Gene Regulatory Mechanism of UDT1 on Anther Development. J. Plant Biol. 63, 289–296. https://doi.org/10.1007/s12374-020-09250-w (Co-first)
Jang, S.-W.†, Yoou, M.-H.†, Hong, W.-J.†, Kim, Y.-J., Lee, E.-J., Jung, K.-H., 2020. Re-Analysis of 16S Amplicon Sequencing Data Reveals Soil Microbial Population Shifts in Rice Fields under Drought Condition. Rice 13, 44. https://doi.org/10.1186/s12284-020-00403-6 (Co-first)
Kim, E.-J., Park, S.-W., Hong, W.-J., Silva, J., Liang, W., Zhang, D., Jung, K.-H., Kim, Y.-J., 2020. Genome-wide analysis of RopGEF gene family to identify genes contributing to pollen tube growth in rice (Oryza sativa). BMC Plant Biol. 20, 95. https://doi.org/10.1186/s12870-020-2298-5
Yoo, Y.-H., Kim, Y.-J., Moon, S., Gho, Y.-S., Hong, W.-J., Kim, E.-J., Jiang, X., Jung, K.-H., 2020. Fast Track to Discover Novel Promoters in Rice. Plants 9, 125. https://doi.org/10.3390/plants9010125
Shin, N.-H.†, Trang, D.T.†, Hong, W.-J.†, Kang, K., Chuluuntsetseg, J., Moon, J.-K., Yoo, Y.-H., Jung, K.-H., Yoo, S.-C., 2020. Rice Senescence-Induced Receptor-Like Kinase (OsSRLK) Is Involved in Phytohormone-Mediated Chlorophyll Degradation. Int. J. Mol. Sci. 21, 260. https://doi.org/10.3390/ijms21010260 (Co-first)
Hong, W.-J.†, Jiang, X.†, Ahn, H.R., Choi, J., Kim, S.-R., Jung, K.-H., 2020. Systematic Analysis of Cold Stress Response and Diurnal Rhythm Using Transcriptome Data in Rice Reveals the Molecular Networks Related to Various Biological Processes. Int. J. Mol. Sci. 21, 6872. https://doi.org/10.3390/ijms21186872 (Co-first)
Ahmar, S., Saeed, S., Khan, M.H.U., Ullah Khan, S., Mora-Poblete, F., Kamran, M., Faheem, A., Maqsood, A., Rauf, M., Saleem, S., Hong, W.-J., Jung, K.-H., 2020. A Revolution toward Gene-Editing Technology and Its Application to Crop Improvement. Int. J. Mol. Sci. 21, 5665. https://doi.org/10.3390/ijms21165665
Hong, W.-J.†, Kim, Y.-J.†, Kim, E.-J., Kumar Nalini Chandran, A., Moon, S., Gho, Y.-S., Yoou, M.-H., Kim, S.T., Jung, K.-H., 2020. CAFRI-Rice: CRISPR applicable functional redundancy inspector to accelerate functional genomics in rice. Plant J. 104, 532–545. https://doi.org/10.1111/tpj.14926 (Co-first)
Yoo, Y.-H.†, Hong, W.-J.†, Jung, K.-H., 2019. A Systematic View Exploring the Role of Chloroplasts in Plant Abiotic Stress Responses. Biomed Res. Int. 2019, e6534745. https://doi.org/10.1155/2019/6534745 (Co-first)
Kim, E.-J., Kim, Y.-J., Hong, W.-J., Lee, C., Jeon, J.-S., Jung, K.-H., 2019. Genome-wide Analysis of Root Hair Preferred RBOH Genes Suggests that Three RBOH Genes are Associated with Auxin-mediated Root Hair Development in Rice. J. Plant Biol. 62, 229–238. https://doi.org/10.1007/s12374-019-0006-5
Hong, W.-J.†, Kim, Y.-J.†, Chandran, A.K.N.†, Jung, K.-H., 2019. Infrastructures of systems biology that facilitate functional genomic study in rice. Rice 12, 15. https://doi.org/10.1186/s12284-019-0276-z (Co-first)
Moon, S., Cho, L.-H., Kim, Y.-J., Gho, Y.-S., Jeong, H.Y., Hong, W.-J., Lee, C., Park, Hyon, Jwa, N., Dangol, S., Chen, Y., Park, Hayeong, Cho, H.-S., An, G., Jung, K.-H., 2019. RSL Class II Transcription Factors Guide the Nuclear Localization of RHL1 to Regulate Root Hair Development. Plant Physiol. 179, 558–568. https://doi.org/10.1104/pp.18.01002
Moon, S., Chandran, A.K.N., Kim, Y.-J., Gho, Y., Hong, W.-J., An, G., Lee, C., Jung, K.-H., 2019. Rice RHC Encoding a Putative Cellulase is Essential for Normal Root Hair Elongation. J. Plant Biol. 62, 82–91. https://doi.org/10.1007/s12374-018-0393-z
Yoo, Y.-H., Kim, M., Chandran, A.K.N., Hong, W.-J., Ahn, H.R., Lee, G.T., Kang, S., Suh, D., Kim, J.-O., Kim, Y.-J., Jung, K.-H., 2019. Genome-Wide Transcriptome Analysis of Rice Seedlings after Seed Dressing with Paenibacillus yonginensis DCY84T and Silicon. Int. J. Mol. Sci. 20, 5883. https://doi.org/10.3390/ijms20235883
Yang, J., Cho, L.-H., Yoon, J., Yoon, H., Wai, A.H., Hong, W.-J., Han, M., Sakakibara, H., Liang, W., Jung, K.-H., Jeon, J.-S., Koh, H.-J., Zhang, D., An, G., 2019. Chromatin interacting factor OsVIL2 increases biomass and rice grain yield. Plant Biotechnol. J. 17, 178–187. https://doi.org/10.1111/pbi.12956
Hong, W.-J., Jung, K.-H., 2018. Comparative Analysis of Flanking Sequence Tags of T-DNA/Transposon Insertional Mutants and Genetic Variations of Fast-neutron Treated Mutants in Rice. J. Plant Biol. 61, 80–84. https://doi.org/10.1007/s12374-017-0425-0
Hoang, T.V., Vo, K.T.X., Hong, W.-J., Jung, K.-H., Jeon, J.-S., 2018. Defense Response to Pathogens Through Epigenetic Regulation in Rice. J. Plant Biol. 61, 1–10. https://doi.org/10.1007/s12374-017-0434-z
Chandran, A.K.N., Bhatnagar, N., Yoo, Y.-H., Moon, S., Park, S.-A., Hong, W.-J., Kim, B.-G., An, G., Jung, K.-H., 2018. Meta-expression analysis of unannotated genes in rice and approaches for network construction to suggest the probable roles. Plant Mol. Biol. 96, 17–34. https://doi.org/10.1007/s11103-017-0675-8
Hong, W.-J.†, Chandran, A.K.N.†, Jeon, J.-S., Jung, K.-H., 2017. Construction and application of functional gene modules to regulatory pathways in rice. J. Plant Biol. 60, 358–379. https://doi.org/10.1007/s12374-017-0034-y (Co-first)
Hong, W.-J., Yoo, Y.-H., Park, S.-A., Moon, S., Kim, S.-R., An, G., Jung, K.-H., 2017. Genome-wide identification and extensive analysis of rice-endosperm preferred genes using reference expression database. J. Plant Biol. 60, 249–258. https://doi.org/10.1007/s12374-016-0552-z